Table of Contents
Preface ix
Contributors xi
1 A Survey of Computational Approaches to Reconstruct and Partition Biological Networks 1Lipi Acharya, Thair Judeh, and Dongxiao Zhu
2 Introduction to Complex Networks: Measures, Statistical Properties, and Models 45Kazuhiro Takemoto and Chikoo Oosawa
3 Modeling for Evolving Biological Networks 77Kazuhiro Takemoto and Chikoo Oosawa
4 Modularity Configurations in Biological Networks with Embedded Dynamics 109Enrico Capobianco, Antonella Travaglione, and Elisabetta Marras
5 Influence of Statistical Estimators on the Large-Scale Causal Inference of Regulatory Networks 131Ricardo de Matos Simoes and Frank Emmert-Streib
6 Weighted Spectral Distribution: A Metric for Structural Analysis of Networks 153Damien Fay, Hamed Haddadi, Andrew W. Moore, Richard Mortier, Andrew G. Thomason, and Steve Uhlig
7 The Structure of an Evolving Random Bipartite Graph 191Reinhard Kutzelnigg
8 Graph Kernels 217Matthias Rupp
9 Network-Based Information Synergy Analysis for Alzheimer Disease 245Xuewei Wang, Hirosha Geekiyanage, and Christina Chan
10 Density-Based Set Enumeration in Structured Data 261Elisabeth Georgii and Koji Tsuda
11 Hyponym Extraction Employing a Weighted Graph Kernel 303Tim vor der Brúck
Index 327